PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29726.m004023
Common NameRCOM_0680560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YB
Protein Properties Length: 158aa    MW: 18003.1 Da    PI: 7.1938
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29726.m004023genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.44.3e-5340135297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    + qdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++wa++ lGf+dy+ pl+ yl++yreleg++
  29726.m004023  40 KGQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDVCWAMGALGFDDYAGPLRRYLQRYRELEGDR 135
                    679*******************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5235152IPR009072Histone-fold
SuperFamilySSF471138.23E-4042150IPR009072Histone-fold
PfamPF008081.3E-2745109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-177391No hitNo description
PROSITE patternPS0068507692IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.9E-1792110No hitNo description
PRINTSPR006152.9E-17111129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDFDLHQTRL GRKGKTNFFL QQEMDDNVGA SGSNEEGGTK GQDRLLPIAN VGRIMKQILP  60
PNAKISKEAK ETMQECVSEF ISFVTSEASE KCRKERRKTV NGDDVCWAMG ALGFDDYAGP  120
LRRYLQRYRE LEGDRANQDK ARNSNTEERE EPSSYRSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4340130292Transcription factor HapC (Eurofung)
4g92_B1e-4340130292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516901.26e-97PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822482e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9RT321e-116B9RT32_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGPOPTR_0008s22520.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-48nuclear factor Y, subunit B5